FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9159151
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA24750.012.8512311
ACGGGAT14950.012.7907569
ACCGCGC7650.011.76592631
CGGGATT15250.011.65401910
GCGTGAG24450.011.31734922
CGCCCGG9250.011.18876135
CACCGCG8900.011.1247530
CGTGAGC25100.011.0242723
AAACGGG25750.011.0080267
AACGGGA21100.010.9817938
CGCGCCT3205.754555E-810.54871833
GAAACGG27850.010.1786446
GGAAACG28350.010.0785945
GCCACCG19950.09.92584128
ACGCCCG4203.2323442E-99.64454334
CCGCGCC9600.09.61115932
CGATACT2352.4849165E-49.59915351
CCCAAAG102600.09.5640691
CGCGCCC5900.09.53556433
ACAGGCG32050.09.40599518
Produced by FastQC (version 0.11.5)