FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7264766
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA22450.015.4779831
ACGGGAT15150.013.9551049
AAACGGG24100.013.3455627
GGAAACG25200.013.336075
GAAACGG24750.013.1784556
AACGGGA20950.013.097668
CGGGATT14350.012.538810
CGGGATA3501.364242E-1011.56704310
ACCGCGC5700.011.44350231
CGCGCCC4550.011.36970833
CACCGCG5800.010.85840130
CCGCGCC6250.010.43647532
AACGGGT4406.548362E-1110.2233968
CGCTAGA2057.818488E-49.87484828
CCGGATT2751.1181537E-59.842982
GCGTGAG18650.09.64788322
GCCACCG17100.09.60215228
CGCCCGG8050.09.49956935
CCCGTAA3909.9104E-89.2568971
CCACGAT3909.9104E-89.2568971
Produced by FastQC (version 0.11.5)