FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070781

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070781
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6424951
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCAGT1354.1527564E-612.23883151
CGTTGGA16900.011.198631
ACGGGAT9350.010.9058089
CGGGATT8750.010.62537310
CACCGCG4200.010.37121830
AAACGGG16400.010.3322557
ACGGGTA1901.587412E-610.2600699
CGGGTAT2053.7965037E-710.2408210
CGTGAGC10850.010.22733723
AACGGGT3600.09.9969918
GCGTGAG9900.09.99699122
AACGGGA13100.09.9588358
CCCAAGT18700.09.8797181
CCCCGTT2609.6915755E-99.8210211
CCCGTAA1851.2622064E-59.7429511
CCCCGAA2209.752057E-79.5584261
GAAACGG17550.09.4867616
ACAGGCG14000.09.425734518
CCCTAAA16200.09.3645611
CCCGTAT1300.0056625529.2433141
Produced by FastQC (version 0.11.5)