FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7907695
Sequences flagged as poor quality0
Sequence length36
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGGGAT15350.011.8224539
CGTTGGA23300.011.7361021
AACGGGA19450.011.489478
AAACGGG24250.011.0716687
GAAACGG25250.010.9921776
CGGGATT14100.010.74317910
GGAAACG24750.010.5485835
CGTGAGC14400.010.102818523
GCGTGAG13200.09.99866622
GAGCCAC38500.09.42731426
CCCAAAG60400.09.1541771
GATTTCG8200.08.417135
CACCACG14450.08.40718330
CGGGAAT7000.08.35597510
CCCAAGT23450.08.3293081
ACAGGCG20100.08.207808518
CGGGATA3305.3811164E-88.180675510
CCACGAT3408.644565E-87.95430041
CAAAGCG11550.07.935171
CCCTAAA17450.07.8352761
Produced by FastQC (version 0.11.5)