FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6843972
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTTCG1156.791893E-515.651764
CGTTGGA22200.014.3190431
CGTCCGA1108.5982063E-414.31769856
CCGTCCG1301.9287564E-413.8457885
ACGGGAT14550.012.9856469
AAACGGG22400.012.8534217
GAAACGG22450.012.7278556
CGGGATT13200.012.43930810
ACGGGTT3850.012.2689059
GCGTGAG17100.012.10175922
AACGGGA19050.012.0434928
GGAAACG24050.011.9747355
CGTGAGC18150.011.65215923
AACGGGT4700.011.4857858
GGCGCAA2351.7658695E-611.48578519
ACCGCGC4950.011.36092831
CACCGCG5300.011.03542730
GCGCAAT2503.7115242E-610.79663720
GCCACCG14200.010.45808128
ACAGGCG24150.010.33862118
Produced by FastQC (version 0.11.5)