FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7549463
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA22650.013.7337831
CCGTCCG1000.007553927613.5005965
ACGGGAT14350.013.3233499
CGGGATT13200.013.29128710
AAACGGG23550.013.27644357
AACGGGA19550.013.2311448
GAAACGG24950.012.2648266
GGAAACG24550.012.006645
CGCGCCC4750.010.89940633
CGCCCGG8000.010.12967535
ACCGCGC6050.010.039371531
GCGTGAG17950.09.89973122
CGCTAAT2057.6651765E-49.8961881
CCGCGCC6400.09.84822932
CACCGCG6500.09.69029630
CGCGTTG1900.00463539559.4707159
CGTGAGC18800.09.4541423
GCCACCG16300.09.24856828
CGAAGAT7000.09.0165261
AACGGGT5505.2750693E-118.9971798
Produced by FastQC (version 0.11.5)