FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7655271
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT3250.015.91684444
AGTTCCG3600.013.74695234
TCTCGTA3800.013.02121643
CCGTATC3900.012.68783738
TATCTCG3950.012.52673941
ACGGGAT12650.012.4457199
TCGTATG4600.012.24987745
AAACGGG22100.012.1106437
CGTTGGA22550.012.108781
AACGGGA17450.011.85782058
GAAACGG23900.011.4831856
CGGGATT12650.011.20114710
GGAAACG24100.011.1355025
ACGCCCG3856.184564E-1111.10143534
CGGGATA3501.6825652E-910.924293510
CGTATCT4651.8189894E-1210.64141139
ATCTCGT4751.8189894E-1210.41697442
TCCGTAT4955.456968E-129.99647737
CGCCCGG8650.09.88220235
AACGGGT5700.09.8645588
Produced by FastQC (version 0.11.5)