FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9283258
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGGGAT15100.011.8177429
CGTTGGA23900.011.8138541
CGGGATT14550.011.74914810
AACGGGA19550.011.1987788
AAACGGG24850.010.8016777
GGAAACG24800.010.5952855
GCGTGAG14750.010.57318622
GAAACGG25400.010.1573626
GAGCCAC46700.09.98643326
CGTGAGC16600.09.93685923
CACCGCG5800.09.58253430
GCCACCG15250.09.53825228
ACAGGCG23150.09.45728418
CGTTACA1450.00132497789.3219381
CCCGTAA2752.42635E-89.2842731
CCCAAGT34550.09.1720431
CCCAAAG78800.09.0912561
CCCTAAA22100.08.7665591
GGACTAC23100.08.439095513
AGGTCGG3757.4760464E-108.4084195
Produced by FastQC (version 0.11.5)