FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5770137
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCCGC2250.017.99879532
ACGTCCG2150.017.78950531
CGTATGC2950.015.25387745
TCTCGTA3150.015.00016442
GTCCGCA3009.094947E-1213.49944733
CGTTGGA16600.013.4226611
ACGGGAT10450.012.4879599
AAACGGG17350.012.19012457
GAAACGG17650.012.110096
TCGTATG3753.6379788E-1212.00013244
AACGGGA13700.011.9889758
CTCGTAT3855.456968E-1211.68843943
CGGGATT10400.011.24983110
ATGCCCG4201.8189894E-1211.24963634
GGAAACG19050.010.8675795
CGCACAT4152.1827873E-1110.84302236
TCCGCAC3959.822543E-1110.82243434
ATCTCGT4152.6357156E-99.75914341
ACCGCGC4152.6393536E-99.75838231
CATCTCG4651.8735591E-109.67777740
Produced by FastQC (version 0.11.5)