FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7229873
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA18300.011.2590771
CGGGATT10550.011.08864410
AAACGGG19600.010.8659727
ACGGGAT11700.010.6396799
AACGGGA15100.010.5284698
CCCAAGT23300.010.0693631
CCCAAAG58500.010.0006231
GAAACGG20800.09.9522476
GGAAACG19650.09.924335
CCCTAAT12100.09.6948821
CCCTAAA18000.09.4414621
GCGTGAG11700.09.3577922
AACGGGT4900.09.1825118
GAGCCAC35750.09.10380626
CGAAACG2157.640418E-69.0703755
CGTGAGC11950.08.91100623
CCTTAAT16200.08.7266231
GCTAGAC9650.08.70362129
CCCGAGT8700.08.643391
ACAGGCG17500.08.57034418
Produced by FastQC (version 0.11.5)