FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4332070
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA11800.012.6420541
ACGCCCG2756.21003E-912.26529234
ACGGGAT7450.012.0730789
CGCCCGG4500.011.99342335
CGCGCCC3102.9449438E-911.60600233
CACCGCG3907.2759576E-1211.53173630
AACGGGA10700.011.3481298
ACCGCGC4001.0913936E-1111.24331531
AAACGGG12350.010.7423527
CAGTCGG1500.00879532410.4981216
CGGGATT7300.010.47298310
CGGCTAA5251.8189894E-129.8517439
CCGCGCC4854.1836756E-119.73647832
GAAACGG13900.09.7104936
CCGGCTA5353.6379788E-129.66759538
CGGGAAT5059.094947E-119.35065910
GACGATT2751.1813051E-49.0362672
CGTGAGC11100.08.91341323
GCCACCG8850.08.89311928
GGAAACG14250.08.8773245
Produced by FastQC (version 0.11.5)