FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11265885
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG4850.017.16363545
CTCGTAT6300.013.57093241
CGTTGGA33850.012.4463971
TCTCGTA6700.012.42563540
ACGGGAT19300.011.4240989
CGTATGC7400.011.2490443
TCGTATG8500.011.11669742
ACGCCCG4950.010.90975834
CCGGCTA10800.010.83389938
AAACGGG33600.010.7803297
ACCGCGC8800.010.48243131
GAAACGG35600.010.4274816
CGGGATT18800.010.411530510
AACGGGA27900.010.4025228
ACACGTC9650.010.25837412
CGCGCCC6900.010.10917833
CGGCTAA10850.09.95443539
CACCGCG9350.09.86603730
GGAAACG37200.09.7974645
CGTCTGA9650.09.79182215
Produced by FastQC (version 0.11.5)