FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10986552
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCCCG6150.025.24219534
CGTATGC7450.021.74468645
TCCCGAT7650.020.58684536
CTCGTAT7750.020.32231943
GTCCCGA7750.020.03090735
CCCGATC8100.019.7208937
TCTCGTA8400.019.0176142
ACCCGTC8800.018.40876831
CCGATCT8500.018.26347238
CACCCGT9000.017.74977130
CCCGTCC9100.017.5542432
TCGTATG9850.016.21806544
TCACCCG9700.016.00494829
CCGTCCC10100.015.59343233
ATCGGAA10300.015.0849091
ACACGTC10950.014.588387512
ATCTCGT11050.014.04882541
CGTTGGA31100.013.75700951
TCGGAAG12000.013.6984832
CGTCTGA11950.013.17902615
Produced by FastQC (version 0.11.5)