FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6033657
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA3350.021.094421
TCGGAAG4500.016.6731533
CGTCTGA4200.016.42502416
ATCGGAA4400.016.3700052
ACACGTC4550.015.82075813
CGGAAGA5500.013.3688374
CACGTCT6050.011.89825514
ACGGGAT10150.011.82010659
CGTTGGA14750.011.7225031
ACGTCTG5900.011.692389515
AACGGGA12600.011.6641478
GAAACGG15250.011.3098766
CGGGATT9750.011.22834310
AAACGGG15100.011.222747
GCACACG6600.011.13395811
GGAAACG15850.010.508825
CACACGT7150.010.48724412
GCGTGAG10150.010.34259322
CGTGAGC10700.010.23143523
ACAGGCG14200.010.03304418
Produced by FastQC (version 0.11.5)