FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070924

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070924
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6665251
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA13550.012.1944651
ACGGGAT9000.011.4961649
CGTAGGT1059.6062914E-411.4448491
AAACGGG15550.010.8966867
AACGGGA12100.010.7815278
CGGGATT9100.010.71071210
GAAACGG16150.010.4957136
CCGAGTA8100.010.0118352
GGAAACG16250.09.8881675
CACCGCG3800.09.88351630
CGATAAT2301.696535E-79.7965421
GATCGGA1705.327962E-59.7197071
ATCGGAA1901.7348628E-59.4848972
CGTGAGC11250.09.4635123
ACAGGCG16750.09.39984818
GCGTGAG11000.09.26963422
CCCAAAG51700.09.26851
GCCACCG9800.09.02773528
GTCACGA2003.234906E-58.99713329
CCCGAGT11050.08.9720361
Produced by FastQC (version 0.11.5)