FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070934

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070934
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7463545
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA21800.013.4712291
ACCGCGC4650.013.0571431
CACCGCG4700.012.91823530
CGCCCGG6450.012.55180635
AAACGGG23750.012.4030217
ACGGGAT13000.012.2810319
AACGGGA19500.012.2233738
GCGTGAG16250.011.7629822
GGAAACG24850.011.6353025
GAAACGG25150.011.5337766
ACGCCCG4201.8189894E-1211.24417634
CGCGCCC3401.0440999E-911.24379833
CGGGATT11650.011.19516810
CGTGAGC17100.010.91576523
CCGCGCC5600.010.84223632
CCCAACG1954.7428664E-410.4262531
CGGGAAT9150.010.07607310
GCCACCG13700.010.01265928
CAGGCGT21400.09.87726719
GATTTCG10300.09.8689135
Produced by FastQC (version 0.11.5)