FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7902459
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA20600.013.3572511
ACGGGAT13300.012.5182199
CGGGATT13100.012.36576310
AAACGGG21750.012.3097777
GAAACGG23400.011.9224526
AACGGGA18200.011.7439648
AACGGGT5200.011.6821558
CCCCGAA3551.6734703E-1011.4358551
GGAAACG24000.011.1556655
GATTTCG10400.09.3023975
CCCGAAA3258.180647E-69.0216191
CCGGCTA8500.08.73494738
ACCGCAC6501.8189894E-128.653172531
CGCCCGG8100.08.61044235
ATTTCGT12800.08.43705756
GCCACCG17150.08.26461128
CCCGAGT20500.08.2514811
CCCGAAT6857.2759576E-128.2314041
CGCACCC5201.4175384E-88.22051533
ACAGGCG24400.08.20632818
Produced by FastQC (version 0.11.5)