FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7180716
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCGAT600.00651445218.7496520
ACGGGAT13500.016.3316639
AACGGGA18150.015.4943918
CGGGATT12350.015.48424510
CGTTGGA21250.014.9468271
AAACGGG21800.014.7586937
GAAACGG22500.013.8051246
GGAAACG23200.013.1946465
ACCGCGC5650.012.34387131
CGCGCCC3900.012.11414533
CACCGCG6350.011.69171730
CCGCGCC6700.010.07359632
CGGGAAT7600.09.76873810
ATGCCCG5901.8189894E-129.15160734
GCGTGAG17450.08.76762222
GCCACCG15700.08.74120528
GAGCCAC50200.08.73932826
ACAGGCG27100.08.46847618
CCACCGC12300.08.41377429
CCCAAAA37350.08.3832621
Produced by FastQC (version 0.11.5)