FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6244253
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA1206.802475E-815.0152691
ACGGGAT9050.011.1023029
GCGTGAG10700.010.79179722
CGGGATT8100.010.73815810
CGTTGGA14050.010.6870241
ACAGGCG15050.010.16366918
AACGGGA11550.09.9975958
AAACGGG14850.09.7956247
ATCGGAA2157.158487E-79.7773842
GAAACGG15550.09.7447146
CGTGAGC10800.09.71988523
GGAAACG15700.09.4662545
CCCCGCG1603.1179166E-49.3845431
CCGAGTA6450.09.3117952
CCCGAGT9400.09.2647411
CCCAAGT20050.08.9118061
CCCCGTA1350.0077416968.8979381
CGAGTAG6500.08.7780873
GAGCCAC29150.08.69430626
CCCTATT10250.08.6429361
Produced by FastQC (version 0.11.5)