FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13401465
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA41000.013.1933141
AAACGGG40600.012.3578087
AACGGGA32600.012.2167928
ACGGGAT23450.012.090089
CGGGATT22750.011.57193510
GAAACGG44650.011.2872766
GGAAACG45650.010.8925695
AACGGGT10150.09.9758058
ACGCCCG6450.09.76695734
GCGTGAG32050.09.33602222
CGTGAGC32650.09.30226923
ACGGGTT8050.08.944499
CGCCCGG11750.08.61659435
GCCACCG26950.08.431643528
ACCGCGC9500.08.28872331
ACAGGCG44750.08.09411718
CACCGCG9800.08.03519630
CGGGAAT15200.07.9937710
GTTGGAA77200.07.9032322
CCGCGCC9150.07.86816932
Produced by FastQC (version 0.11.5)