FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15181488
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA42550.013.3360571
ACGGGAT28050.012.4324729
CGGGATT26300.012.062036510
AAACGGG45900.011.91138657
GAAACGG45050.011.8867276
AACGGGA39200.011.7659368
GGAAACG47150.011.3095885
CGTCCGA1802.3478159E-411.2499396
ACGCCCG6600.09.88565934
AACGGGT9150.09.343758
CGTATGC6150.09.14635245
GCCACCG29950.08.9399128
CACCGCG11000.08.795464530
ACCGCGC9900.08.63634631
GCGTGAG35050.08.60138322
ACAGGCG46750.08.51819318
ATAGGCG6155.820766E-118.41411818
GATTTCG20300.08.2019265
CGCCCGG13200.08.18123535
CGTGAGC36350.08.16998123
Produced by FastQC (version 0.11.5)