FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6624368
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA21950.013.4656281
ACGGGAT13950.012.8976379
GAAACGG22400.012.5537776
AACGGGA17950.012.529398
AAACGGG22950.012.1515987
CGGGATT12650.012.08953310
GGAAACG22750.011.9005385
CCCGAAA3104.0671148E-710.1895771
CACCGCG6350.09.563868530
ACCGCGC5801.8189894E-129.30736631
CGGGATA2952.657655E-59.14850910
CCCGGAT2751.19763354E-49.0250541
GCGTGAG15950.08.88410322
CGTGAGC17600.08.81800123
CCCCGGT2050.0084378758.8049311
CGCGCCC4203.2345815E-78.568686533
GAGCCAC48650.08.553081526
GTTGGAA41300.08.522062
ACAGGCG23300.08.39758618
GCCACCG15000.08.39712228
Produced by FastQC (version 0.11.5)