FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4710965
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA15350.014.1102061
AAACGGG16050.013.0327167
GAAACGG16400.012.7557966
ACGGGAT9350.012.7494449
AACGGGA12750.012.7013338
GGAAACG16450.012.2059485
CGTTAAG1400.005154113811.2808161
CGGGATT9100.011.12156410
GATTTCG5600.010.4744855
ACAGGCG14300.09.75144218
CGAGTAG7900.09.425183
CCGAGTA9000.09.2753372
CCGTAAA1950.005598279.2560541
AACGGGT3901.0403346E-79.2274648
CGTGAGC10200.09.04078423
CCGACCT2050.0084401928.804542
CGCGCCC2607.036196E-48.65019733
GCGTGAG10550.08.52766122
CGAGAAT3451.7306715E-58.5014851
CATGCGC2400.0032875568.43438923
Produced by FastQC (version 0.11.5)