FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006070994

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006070994
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7309623
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA20650.012.8137511
AACGGGA16750.012.75233658
CGGGAAT8800.012.51971310
AAACGGG21100.012.4676437
GAAACGG22000.012.0597246
GGAAACG23600.011.2032455
ACGGGAT10850.011.1903849
ACGGGAA9350.010.5808869
ACCGCGC5000.010.34458531
CGGGATT10500.010.06443810
CACCGCG5007.4578566E-119.44505730
AACGGGT4203.3556717E-89.1008228
CCGCGCC5556.366463E-118.91431332
CCCGACC4355.3934855E-88.8383281
CGCGCCC4152.7026908E-78.6702233
CGTGATA3755.236552E-68.4432041
TCTCGAC3053.806176E-48.11050931
CGCGATC2500.00476329458.09476721
CGCCCGG7601.8189894E-127.98820135
ACAGGCG25700.07.87417818
Produced by FastQC (version 0.11.5)