FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11913517
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCCGA754.6081488E-520.9994876
CGTTGGA32350.013.4974171
AAACGGG34150.012.0568067
AACGGGA29000.011.7160678
ACGGGAT19950.011.5035759
GAAACGG35700.011.4072856
GGAAACG36400.010.8800435
CCGGCTA12700.010.4529438
CGGGATT19650.010.07617510
CCCGGAT5059.094947E-129.8051571
CTCGTAT4854.0017767E-119.74227544
CGGCTAA13950.09.67758939
AGGTCGG7150.09.44135955
GTCGGGA6301.8189894E-128.9283537
AACGGGT8350.08.8926338
CCCGTAA4854.0490704E-98.8172891
TCTCGTA4854.0727173E-98.81443943
CGGGAAT12300.08.59742310
CGGGATA4853.801142E-88.35038210
CCACGAT6807.2759576E-128.2747391
Produced by FastQC (version 0.11.5)