FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10585959
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA27450.010.3872991
ACGGGAT18750.010.1590639
ATAGGCG3600.010.00021318
GCGTGAG16700.09.970695522
CGGGATT17300.09.79678610
CGTGAGC17500.09.77205223
AACGGGA24800.09.7370068
ACAGGCG24000.09.68770618
GAAACGG29800.09.6132096
AAACGGG29400.09.5909547
GGAAACG30050.09.3338925
GCCACCG14850.09.2936128
CACCGCG5350.09.25463230
CCACGAA4550.08.90521
CCCAAGT35400.08.7328351
CCCAAAG82100.08.4996511
TAGGCGC1600.0032765398.43771919
GAGCCAC50400.08.36283926
GTCGGGA3305.377842E-88.1810667
CAGGCGT21700.08.01864119
Produced by FastQC (version 0.11.5)