FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8681869
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA3000.011.0028781
ATCGGAA3500.010.7157312
CGTTGGA20250.010.66945651
ATAGGCG2402.6648195E-910.624228518
AACGGGA17350.010.2876168
GCGTGAG14400.010.00008122
ACGGGAT12550.09.9199989
CGTGAGC15000.09.80019223
GCCACCG14750.09.76279128
AAACGGG22950.09.6725567
GGAAACG22500.09.6673015
CCCAAAG69850.09.5801721
ACAGGCG21400.09.4619318
CGGGATT11300.09.42447510
GAAACGG23150.09.3946216
CCCAAGT32450.09.3398851
CACCGCG6350.09.21256630
GAGCCAC46200.09.02615126
CCCGAGT14400.08.7522891
CGGGAAT7100.08.66169310
Produced by FastQC (version 0.11.5)