FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7899742
Sequences flagged as poor quality0
Sequence length36
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGGCG2052.575689E-911.70580818
CGTTGGA21800.011.1759811
CGGGATT14450.011.10583410
ACGGGAT15850.010.9765029
GCGTGAG12750.010.93976622
ACAGGCG19600.010.48334218
CGTGAGC13000.010.38327623
AAACGGG24900.010.179417
CCCGATT2556.9085218E-910.0261891
AACGGGA21250.09.9516588
GAAACGG25350.09.822656
GGAAACG25000.09.6008895
AGGCGCC6900.09.56398420
GAGCCAC36900.09.30780226
AGGCGTG17500.08.913136520
CCCGAAA2054.1781997E-58.8034831
CCCAAGT26150.08.7417631
TACAGGC51550.08.72826417
CAGGCGT17650.08.49748819
CCCAAAG63050.08.4439431
Produced by FastQC (version 0.11.5)