FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7006109
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAACGA900.003777555414.98738132
CCGGTAT1251.3093148E-414.4918242
ACCGCGC3850.012.26240231
ACCCGGC5050.011.57581736
CGTTGGA19150.011.4745721
CGTGAGC16100.011.449985523
GCCACCG13050.011.36973728
CGCCCGG4750.011.36023535
AAACGGG19700.011.1834767
TGCGCCC3256.199116E-911.06776133
GCGTGAG15300.011.02013222
GAAACGG20750.010.9448586
CCTCGAA3551.888111E-910.8481121
ACCGCAC4152.1827873E-1110.8342531
CACCGCG4152.1827873E-1110.8342530
CCCCGAA2951.945773E-710.75077151
GGAAACG20800.010.6675635
CGTAGTA1700.001738262210.6604281
CTGCGCC4651.8189894E-1210.63620632
AACGGGA16700.010.500148
Produced by FastQC (version 0.11.5)