FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7516199
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAATCG750.001082680318.0693974
ACGGGAT12950.012.6756339
CGTTGGA21750.012.3602031
CGGGATT12550.011.82550310
AACGGGA17900.011.808418
AAACGGG21950.011.6784967
GAAACGG22850.010.4313176
CGTATAA5850.09.6543261
CCCAACG2352.4484072E-49.6132451
GGAAACG24800.09.3809125
AACGGGT4702.3392204E-99.0901778
CCCGAGA4253.765672E-89.036451
CGCCCGG7550.08.93605435
ACGCCCG3704.714653E-68.5093234
GCGTGAG17600.08.17746322
ACCGCGC4802.8790055E-77.964666431
CGTGAGC18150.07.806226723
CGGCTGA6154.3964974E-97.6782746
CCACGAA4751.9512263E-67.6096421
CCGCGCC5352.0032348E-77.566365232
Produced by FastQC (version 0.11.5)