FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12198471
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAACGGG35450.012.0589537
AACGGGA30000.011.5495858
GAAACGG36300.011.34345156
CGTTGGA34350.011.0762821
ACCGCGC9350.010.82862231
ACGGGAT21950.010.7623599
GGAAACG39500.010.5953835
CACCGCG10650.010.14060630
CGGGATT22350.09.66412310
AACGGGT8400.09.6425118
CCCGTTA4001.48556865E-89.568041
GCGAATT4407.183189E-99.20704652
CCCCGAA5555.7843863E-108.5184451
CCCGTAT3451.7791066E-58.4831721
CGGGAAT14700.08.418110
CCGCGCC11250.08.39980132
CGTGGGA11300.08.3676771
CCGGATT4601.4373654E-78.3174762
CCCTAAG23450.08.2563791
CGTGAGC33300.08.10755123
Produced by FastQC (version 0.11.5)