FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071081

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071081
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5847112
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGCCT1758.1872713E-714.14251333
CACCGCG4450.013.14507330
AACGGGA14100.013.0827748
CGTTGGA17100.012.7854821
ACCGCGC4450.012.63949331
CCACGAA3601.8189894E-1212.5218651
AAACGGG16900.012.5125637
CGTAAGC1300.003027886912.11332823
CCTACGT2054.7418744E-612.0942881
GAAACGG17200.012.0353116
ACGGGAT10200.011.6890939
CGGGAAT5850.011.53640610
GGAAACG18150.011.1585675
CCGCGCC5400.010.83279132
CGGGATT9550.010.60020410
CGCGATC1700.001842112310.58634821
GCCACCG11450.09.82441628
GCGCGAT1850.00371499439.72799620
ACGGGAA6750.09.3316699
CGGGATA2453.8795682E-49.18203710
Produced by FastQC (version 0.11.5)