FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9374441
Sequences flagged as poor quality0
Sequence length36
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGGGA15900.011.9802788
CGTTGGA21000.011.219531
AAACGGG21200.011.1076987
ACGGGAT12800.010.8976619
CGTGAGC18300.010.81913223
ACAGGCG23600.010.80431518
CCCAAAG72150.010.5038711
GCGTGAG18150.010.33000722
CGGGATT11850.010.25243410
GAAACGG22800.010.1311816
GGAAACG22700.09.9131445
AGGCGTG21800.09.83874820
TAGGCGT2505.664333E-89.59931619
GAGCCAC46650.09.5497726
GGGATTA66950.09.31972412
CCCAAGT30500.09.2994291
CCCCAAT13400.08.847421
AAAGTGC58800.08.8276914
TACAGGC56050.08.80401117
CAGGCGT23600.08.77056119
Produced by FastQC (version 0.11.5)