FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6508467
Sequences flagged as poor quality0
Sequence length36
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA1251.7240563E-613.2376071
CCCGTAT1151.0631866E-513.080641
CGTTGGA16950.012.5134271
ACGGGAT10950.011.7784449
CGGGATT10200.011.61530310
AAACGGG18750.011.5176757
GAAACGG19000.011.3710196
AACGGGA15150.011.2848518
CCCGATT1602.2575496E-611.2535222
GGAAACG18300.011.0684435
AACGGGT3800.010.6557448
CCATACG1000.00860113510.5299151
CGCAAGA1000.00860113510.5299151
CGTTAGT1200.002888118110.0284911
ACAGGCG14100.09.78533518
GCGTGAG9750.09.69057622
CGTGAGC10650.09.57575323
ATCGGAA1901.752791E-59.476652
CCCAACG1757.2048184E-59.4554351
CCCCGAT1603.0613178E-49.4017111
Produced by FastQC (version 0.11.5)