FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8499437
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA24550.014.5416141
AAACGGG26150.013.6733847
AACGGGA21500.013.4927938
GAAACGG27900.013.0601536
ACGGGAT16300.012.8305699
GGAAACG28350.012.4988845
CGGGATT16100.011.73286210
ACGGGTT4950.010.9032679
AACGGGT6300.010.3516148
CGTAGTA2057.50065E-49.9196351
GCGTGAG21300.09.608108522
CCCAAAG99200.09.36132051
CGGGAAT9450.09.28075710
GATTTCG10150.09.1168015
CGCATAA2000.00681174839.0378891
CGCCCGG9750.08.76506535
CGTGAGC23150.08.74324723
CCTCGAT2851.7385175E-48.720771
CGTAGAA3653.6841193E-68.666471
TGCGCCC5952.6375346E-108.31561933
Produced by FastQC (version 0.11.5)