FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7678810
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA23700.013.0377791
AACGGGA19850.012.1268368
AAACGGG24900.012.1068117
GAAACGG25100.011.5627226
ACGGGAT14450.011.5209469
ACCGCGC6900.011.0877831
CGGGATT14600.010.63213510
CACCGCG7700.010.52026230
GGAAACG27450.010.4908075
CGGGAAT8250.010.362246510
CGCGCCC5950.010.21150733
CCGCGCC7950.010.19029932
GCCACCG18300.09.9596928
CCCCGAA3857.712515E-99.9590891
CGTAGTA2352.488792E-49.597621
CGCCCGG9200.09.29344235
CGTGAGC21750.09.205482523
GCGTGAG20600.09.06414122
AACGGGT6105.456968E-128.8512728
CCCAAAG89550.08.563371
Produced by FastQC (version 0.11.5)