FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6462034
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGCGT1056.055555E-414.99564131
ACGGGAT12350.012.7478499
AAACGGG18500.011.6709287
AACGGGA16400.011.5197048
CGTTGGA19700.011.4506091
CGGGATT11900.011.33992410
CCGCGTC1500.00880339810.49694832
GAAACGG20850.010.3578236
CCCCGGT2952.3799257E-69.94068051
CGGGATA2504.3744E-59.89597410
CACCGCG5251.8189894E-129.85427830
CGCGCCC3451.7393904E-79.77976533
GGAAACG22400.09.7675315
ACAGGCG22800.09.5685518
CCGCGCC5607.2759576E-129.23838532
GCGTGAG16600.09.2136922
ACCGCGC4702.3246685E-99.093101531
CGAAAGT2504.6200329E-49.023081
CCACGAA3309.902729E-68.8863671
CAGGCGT20000.08.65904419
Produced by FastQC (version 0.11.5)