FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7711909
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA22050.014.0217431
AACGGGA18200.013.5974558
CGTTTCG1504.28098E-513.4985644
AAACGGG22600.013.2397417
GAAACGG23850.012.6401646
ACGGGAT15100.012.2172439
CGGGATT13750.011.94418410
CGCGCCC3601.8189894E-1111.87404533
CGTGAGC20200.011.8064423
GCGTGAG19150.011.74809722
CGAAACG2158.231589E-611.5104045
ACAGGCG26100.011.20599618
GGAAACG26200.010.8194615
CGCCCGG6200.010.52327935
ACCGCGC5600.010.44558931
CACCGCG6100.010.32697230
CGGGAAT6700.010.07355510
CCGCGCC5850.09.9992632
GAGCCAC58050.09.72834126
GCCACCG17000.09.661489528
Produced by FastQC (version 0.11.5)