FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7046280
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA20500.015.19426251
CGAATCG950.00538332714.2090574
AAACGGG21150.014.04117
AACGGGA19250.013.4401688
GAAACGG22550.013.0696016
ACGGGAT13950.013.0631659
GGAAACG23000.012.7160765
CGGGATT13000.011.94107210
CGGGAAT7700.011.68710310
CGCCCGG7800.010.67219935
TATGCCG1700.001841046110.587143
CCCGAAA3002.578563E-710.533221
GCGTGAG18050.010.2205522
CGCGCCC4551.2369128E-109.88929733
ACGCCCG4102.1427695E-99.87723734
CGGGATA3206.5359563E-79.84273110
CCCGTAA2801.37425395E-59.6733661
CGTGAGC18550.09.58169523
ACCACGC13200.09.54460231
CACCGCG6150.09.51121130
Produced by FastQC (version 0.11.5)