FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5974066
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATAGG1403.59143E-412.8651691
GATTTCG6600.010.5702645
ATGCGCT2151.0366359E-410.4677053
CGGGATT9150.010.32748310
ACGGGAT10100.010.024219
CCACGAT3155.216025E-710.0062431
GAAACGG16050.09.8138686
AAACGGG15900.09.7637037
AATGCGC1850.0037019719.7321362
CCCCGAT2801.4160609E-59.6488771
AACGGGA13400.09.5703778
CGTTGGA14000.09.4880621
CGGATTT3155.6549907E-69.2880113
CCCGGAT3451.8031678E-69.1361341
GGAAACG17250.09.0017735
CCCGAAA4102.206616E-78.7859691
CCCCGGT2606.9640484E-48.6592481
ATTTCGT8000.07.87562856
CCCGCAA2900.00205086667.76346351
CCATCGA2700.0093846187.50468161
Produced by FastQC (version 0.11.5)