EGAF00006071201 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00006071201
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4377341
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCCG	46945	1.0724547162306979	TruSeq Adapter, Index 3 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	5110	43.59828	45
TCTCGTA	5490	43.068172	40
ATCGGAA	5590	42.830807	1
CTCGTAT	5530	42.758602	41
ACACGTC	5610	42.66825	12
TCGGAAG	5610	42.625713	2
CGTATGC	5505	42.588856	43
CGGAAGA	5620	42.509354	3
CGTCTGA	5640	42.44129	15
ATCTCGT	5535	42.39916	39
ACGTCTG	5650	42.286537	14
TCGTATG	5550	42.24306	42
CATCTCG	5575	42.09687	38
CACGTCT	5720	41.808376	13
GCACACG	5745	41.66465	10
CACACGT	5895	40.642643	11
GTATGCC	5800	40.545567	44
CTTAGGC	6015	39.237442	32
ACTTAGG	6250	37.688393	31
TTAGGCA	6200	37.672634	33