FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9827041
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAACGGG29800.013.2848527
CGTTGGA31600.013.1372841
ACGGGAT18650.012.9057419
AACGGGT7150.012.89899358
GAAACGG31800.012.5907976
AACGGGA24100.011.9473328
CGGGATT17300.011.83235210
ACCGCGC7400.011.55092131
GGAAACG33400.011.4033445
CCGCGCC8300.011.11144432
CGCCCGG10050.010.51937535
CGCGCCT3857.221388E-1010.51646733
ACGGGTT6650.010.4861989
CACCGCG7900.09.965651530
GCGTGAG24050.09.82082122
CGTGAGC25150.09.65955523
GCCACCG21900.09.03873628
CGAAACG2504.6636016E-49.0147145
TATCTCG5556.366463E-118.91636541
CCGTATC5555.8935257E-108.51107538
Produced by FastQC (version 0.11.5)