FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6737499
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA16350.011.1263511
CGGGATA2104.5831257E-810.71341110
GCCACCG9200.010.59703928
ACGGGAT10500.010.5705659
GCGTGAG10800.010.55477222
CACCGCG3600.010.41597130
CGGGATT9250.010.37753110
CGTGAGC11950.09.79006923
AACGGGA14900.09.7643038
AAACGGG18100.09.5296097
GAAACGG17800.09.3531696
CCCAAGT21800.09.3102731
GGAAACG18350.09.0728285
CCCTAAA16450.09.04803851
CCCGAAT3357.7852746E-108.9757411
CGATAAA2352.3599514E-68.9566441
ACAGGCG15950.08.93343918
CGAGAAT2209.937152E-68.88394451
ATAGGCG2201.0239419E-58.86291318
CCCAAAG53250.08.8371021
Produced by FastQC (version 0.11.5)