FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8947668
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGGGA22000.013.9056198
CGTTGGA27050.013.5108671
AAACGGG28400.013.1481997
ACGGGAT15400.012.8539329
CGGGATT14700.012.39465610
GAAACGG29250.012.3815946
GGAAACG29900.012.1339235
CGGGAAT10650.010.13814410
ACCGCGC6250.010.07725831
CACCGCG7200.09.68486530
CGCGCCC4904.9112714E-119.64034233
CCGTAAA2709.9337754E-59.1814132
ACGGGAA11300.08.957949
CCGCGCC7100.08.87082632
ATAGGCG2902.2024768E-48.532418
CCGGCTA9650.08.39159438
GCCACCG20350.08.1797328
CTCGTAT3309.872229E-58.17954742
GACGATT5555.0931703E-98.1211512
ACGCCCG4457.782146E-78.08777834
Produced by FastQC (version 0.11.5)