FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6040206
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAACGGG18800.012.2073757
CGTTGGA18400.012.1089141
GAAACGG18900.011.9051846
ACCGCGC4500.011.49964631
AACGGGA16600.011.2495618
ACGGGAT12050.011.2028839
CCCGAAG4051.2732926E-1111.1138061
GGAAACG19450.011.1057935
CGCGCCC3501.6716513E-910.92832633
CGGGATT11350.010.902657510
CGTTCGA1450.006817938310.8647031
CACCGCG5400.010.832911530
CCCGTAA2759.962896E-710.6389441
GCCACCG13900.010.52117228
CGTGAGC17900.010.43255323
GCGTGAG16100.010.34121122
CCGCGCC5450.09.90803532
ACCGTGC5700.09.86811831
CCCCGAA2801.4224872E-59.6451961
AAGCGGC6050.09.2983133
Produced by FastQC (version 0.11.5)