FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6891370
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA20450.014.2389211
ACGGGAT12900.014.1257479
CGGGATT11650.013.32424110
TATGCCG1902.0689513E-613.0244193
AACGGGA17650.013.0008458
AAACGGG22650.012.7132887
GGAAACG22850.012.306835
GAAACGG23250.012.0951016
ACCGCGC5700.011.84038231
CACCGCG5950.011.72217230
CGCGCCC4551.8189894E-1210.87966833
CCGCGCC6000.010.87436432
CGGGATA3154.587673E-810.71272610
AACGGGT5800.010.0846658
CGATAAC1800.002879208410.0322461
GCCACCG16950.09.29169428
CGCCCGG8850.09.15313635
CGGGAAT7300.08.93705510
ACAGGCG25750.08.8238318
CGTATGC3401.4316258E-58.6306821
Produced by FastQC (version 0.11.5)