FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071310

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071310
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11385317
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATCTCG13350.030.3293839
CTCGTAT13950.029.18614242
CCGATGT13650.029.1684233
TCTCGTA14650.027.63803541
ACCGATG14600.027.27047532
CGATGTA14600.027.27047534
TCGTATG15150.026.72589143
GATCGGA15750.026.5055581
CGTATGC15400.026.43809544
CACCGAT15200.026.19401231
ATCGGAA17000.024.5189232
ATCTCGT16650.024.31815140
GTCACCG17000.023.0235729
TCGGAAG18350.022.8378623
TCACCGA17500.022.75136830
ACACGTC18650.021.58969513
CGTCTGA18850.021.36062616
ACGTCTG20550.019.92195115
CGGAAGA21550.019.5511764
CACGTCT22550.018.15503714
Produced by FastQC (version 0.11.5)