FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9082417
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA27150.014.2601991
AACGGGA24650.012.4143478
AAACGGG29100.012.371217
CGGGATT16850.012.2855510
ACGGGAT18150.012.2730059
GAAACGG29600.012.0098786
GGAAACG32500.011.3544785
CACCGCG6550.09.9611830
AACGGGT5701.8189894E-129.4741088
CGATATG1950.0057065869.234691
CGGGAAT10500.09.21479910
GCCACCG17900.09.17542728
CGCGCCC4458.76571E-99.10062833
CCGCGCC6200.09.07193732
ACAGGCG29800.08.68212618
ACCGCGC6259.094947E-128.63938731
GATTTCG12100.08.5541955
CGTATGC4253.8605685E-78.46989445
CTCGTAT3755.617936E-68.39926543
GCGTGAG20950.08.37644822
Produced by FastQC (version 0.11.5)