FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4564243
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCGCC3151.8189894E-1213.57076532
AAACGGG12700.013.4640557
ACCGCGC3201.8189894E-1213.35872131
AACGGGA11300.012.9417038
CGTTGGA12300.012.8088831
GAAACGG12850.012.6065256
CACCGCG3651.8189894E-1212.32816330
CTCGTAT2207.929848E-712.27347242
CGGCTAC2402.2660097E-611.2498233
ACGGGAT8450.010.9165069
GGAAACG14400.010.7810765
TCTCGTA2301.7363287E-510.76116841
CGCGCCC2352.203274E-510.53174533
CGGGATT7850.010.31785310
CGTATGC2709.245718E-610.00148344
GCGCCCG3451.7310776E-79.78277334
CGGGAAT5353.6379788E-129.67231810
ACGGCTA2851.7599474E-59.47322132
CCCGAAA2403.139622E-49.3779311
GCGATCT3901.0355507E-79.23021622
Produced by FastQC (version 0.11.5)