FastQCFastQC Report
Sat 23 Apr 2022
EGAF00006071326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006071326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7497834
Sequences flagged as poor quality0
Sequence length36
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACAGGCG16650.011.7108518
AACGGGA13650.011.4277318
CGTTGGA17550.011.3910691
AAACGGG17500.011.3134537
GCGTGAG12400.011.24917222
GAAACGG17800.010.9542496
ACGGGAT11250.010.93252859
GAGCCAC34800.010.6889426
GGAAACG17400.010.6888695
CCCAAAG60750.010.41659451
CGGGATT10800.010.415910
CGTGAGC13450.010.37105423
CCCTAGA11200.010.0654511
CCCCGAT2609.582436E-99.8280091
AGGCGTG16000.09.74928220
CCCAAGT23950.09.4140331
CCCTAAA17350.09.3565181
GGATTAC53600.09.34632813
TACAGGC44900.09.15300217
TTACAGG56400.09.14826416
Produced by FastQC (version 0.11.5)